Rollo A, Lojka B, Honys D, Mandák B, Chia Wong JA, Santos C, Costa R, Quintela-Sabarís C, Riberiro MM. 2016. Genetic diversity and hybridization in the two species Inga ingoides and I. Edulis: potential applications for agroforestry in the Peruvian Amazonas. Annals of Forest Science 73:425-435. doi:10.1007/s13595-015-0535-0
Perry J, Lojka B, Quinonez Ruiz LG, Van Damme P, Houška J, Fernandez EC. 2016. How natural Forest Conversion Affects Insect Biodiversity in the Peruvian Amazon: Can Agroforestry Help?. Forests 7(4):82. Doi:10.3390/f7040082.
Tuisima-Coral L, Hlásná-Čepková P, Lojka B, Weber JC, Filomeno-Alves-Milo S. 2016. Genetic diversity in Guazuma crinita from eleven provenances in the Peruvian Amazon revealed by ISSR markers. Bosque 37(1): 63-70. doi: 10.4067/S0717-92002016000100007.
Polesny Z, Verner V, Vlkova M, Banout J, Lojka B, Valicek P, Mazancova J. 2014. Non-timber forest products utilization in Phong Dien Nature Reserve, Vietnam: Who collects, who consumes, who sells? Bois et Forets des Tropiques, 322(4): 39-49 (link)
Vebrova H, Lojka B, Husband TP, Chuspe Zans ME, Van Damme P, Rollo A and Kalousova M. 2014. Tree diversity in cacao agroforests in San Alejandro, Peruvian Amazon. Agroforestry Systems: 88:1101–1115. DOI: 10.1007/s10457-013-9654-5
Lojka B, Preininger D, Van Damme P, Rollo A and Banout J. 2012. Use of Amazonian tree species Inga edulis for soil regeneration and weed control. Journal of Tropical Forest Science 24(1), 89-101.
Lojka B, Hlasna Cepkova P, Navratilova L, Van Damme P, Banout J, Polesny Z and Preininger D. 2011. Methods for short-term control of Imperata grass in Peruvian Amazon. Journal of Agriculture and Rural Development in the Tropics and Subtropics 112(1), 37-43.
Banout J, Ehl P, Havlik J, Lojka B, Polesny Z. and Verner, V. 2011. Design and performance evaluation of a Double-pass solar drier for drying of red chilli (Capsicum annum L.). Solar Energy 86(3), 506-515. doi:10.1016/j.solener.2010.12.017.
Vlkova M, Polesny Z, Verner V, Banout J, Dvorak M, Havlik J, Lojka B, Ehl E, and Krausova J. 2011. Ethnobotanical knowledge and agrobiodiversity in subsistence farming: case study of home gardens in Phong My commune, central Vietnam. Genetic Resources and Crop Evolution 58(5), 629-644. doi: 10.1007/s10722-010-9603-3.
Banout J, Havlik J, Kulik M, Kloucek P, Lojka B and Valterova I. 2010. Effect of solar drying on the composition of essential oil of Sacha culantro (Eryngium foetidum L.) grown in the Peruvian Amazon. Journal of Food Process Engineering 33, 83-103. doi: 10.1111/j.1745-4530.2008.00261.x.
Lojka B, Lojkova J, Banout J, Polesny Z and Preininger D. 2008. Performance of an improved fallow system in the Peruvian Amazon—modelling approach. Agroforestry Systems 72(1), 27-39. doi: 10.1007/s10457-007-9079-0.
Banout J, Lojka B, Matouskova N, Polesny Z and Lojkova J. 2008. Investigation of Imperata sp. As a primary feedstock for compost production in Ucayali region, Peru. Journal of Agriculture and Rural Development in the Tropics and Subtropics 109(2), 113-127.
Lojka B. 2012. Agroforestry for the Peruvian Amazon – Looking for Alternatives to Slash-and-Burn Farming. Lambert Academic Publishing, Saarbruecken, Germany. 163 pp. ISBN 978-3-659-24595-4.
Lojka B, Quinones L et al. 2009. Manual Agroforestal – para ecosistemas de altura en Ucayali, Perú. CIDRA, Pucallpa, Peru. 201pp. ISBN 978-612-45574-0-8.
Lojka B, Bortl L, Riva RR, Banout J, Lojkova J, Polesny Z, Preininger D, Ugarte Guerra J, and Verner V. 2016. Multistrata agroforestry as an alternative to slash-and-burn farming in the Peruvian Amazon. In. Dagar JC and Tewari JC (eds.). Agroforestry Research Development. Nova Science Publishers, Inc. Hauppauge, USA: 383-398. ISBN-978-1-63485-094-0.
Lojka B, Kulikova B, Lojkova J and Banout J. 2010. How to Improve Adoption of Agroforestry Systems among Small Farmers in Peruvian Amazon? In. Kellimore LR (ed.). Handbook on Agroforestry: Management Practices and Environmental Impact. Nova Science Publishers, Inc. Hauppauge, USA: 389-405. ISBN-978-1-60876-359-7.
Lojka B, Krausova J., Kubik S. and Polesny Z. 2010. Assessment of insect biological diversity in various land use systems in the Peruvian Amazon. In. Rojaz N., Prieto R. (eds.).The Amazon Basin: Plant Life, Wildlife and Environment. Nova Science Publishers, Inc. Hauppauge, USA: 103-121. ISBN-978-1-60741-463-6.
Lojka B, Banout J, Banoutova L, Verner V and Van Damme P. 2011. Diversity of shifting cultivation cycles among small-scale farmers in Peruvian Amazon. Agricultural Sciences 2(2). 68-77. doi: 10.4236/as.2011.22011.
Lojka B, Dumas L, Preininger D, Polesny Z and Banout J. 2010. The use and integration of Inga edulis in agroforestry systems in the Amazon – a review. Agricultura Tropica et Subtropica 43(4), 352-359.